SNP Profiles of MO 9 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
1._GC-05-119-3-21	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
2._GC-05-119-3-21	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
3._GC-05-071-2-22	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
4._GC-05-071-2-22	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
5._MO_9	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
6._MO_9	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
7._MO_9	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
8._GC-05-119-3-21	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
9._MO_9	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
10._RUQ_1691	__	__	CG	__	__	__	__	TT	__	CC	__	GG	__	AG
11._MO_9	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
12._MO_9	CT	AA	CG	TT	CT	AC	CC	GT	CT	CT	AA	AG	CT	AG
13._GC-05-119-3-21	CT	AA	CG	TT	CT	AC	CC	GT	CT	CT	AA	AG	CT	AG
14._GC-05-071-2-22	CT	AA	CG	TT	CT	AC	CC	GT	CT	CT	AA	AG	CT	AG
15._GC-05-071-2-22	CT	AA	CG	TT	CT	AC	CC	GT	CT	CT	AA	AG	CT	AG
16._GC-05-071-2-22	CT	AA	CG	TT	CT	AC	CC	GT	CT	CT	AA	AG	CT	AG
17._MO_9	CT	AA	CG	TT	CT	AC	CC	GT	CT	CT	AA	AG	CT	AG
18._MO_9	CT	AA	CG	TT	CT	AC	CC	GT	CT	CT	AA	AG	CT	AG
19._MO_9	CT	AA	CG	TT	CT	AC	CC	GT	CT	CT	AA	AG	CT	AG
20._GC-05-071-2-22	CT	AA	CG	TT	CT	AC	CC	GT	CT	CT	__	AG	CT	AG
21._MO_9	CT	AA	CG	TT	CT	AC	CC	GT	CT	CT	__	AG	CT	AG
22._RUQ_1691	GG	GG	CG	AG	AA	AC	GG	AA	__	__	AA	GG	GG	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CT	AA	CG	CT	CC	GG	GG	AA	TT	CC	GG	GT	CT	CC
1._GC-05-119-3-21	CT	AA	CG	CT	CC	GG	GG	AA	TT	CC	GG	GT	CT	CC
2._GC-05-119-3-21	CT	AA	CG	CT	CC	GG	GG	AA	TT	CC	GG	GT	CT	CC
3._GC-05-071-2-22	CT	AA	CG	CT	CC	GG	GG	AA	TT	CC	GG	GT	CT	CC
4._GC-05-071-2-22	CT	AA	CG	CT	CC	GG	GG	AA	TT	CC	GG	GT	CT	CC
5._MO_9	CT	AA	CG	CT	CC	GG	GG	AA	TT	CC	GG	GT	CT	CC
6._MO_9	CT	AA	CG	CT	CC	GG	GG	AA	TT	CC	GG	GT	CT	CC
7._MO_9	CT	AA	CG	CT	CC	GG	GG	AA	TT	CC	GG	GT	CT	CC
8._GC-05-119-3-21	CT	AA	CG	CT	CC	GG	GG	AA	TT	CC	GG	GT	CT	CC
9._MO_9	CT	AA	CG	CT	CC	GG	GG	AA	TT	CC	GG	GT	CT	CC
10._RUQ_1691	__	__	__	__	__	GG	GG	AA	__	CC	GG	__	__	CC
11._MO_9	CT	AA	CG	CT	CC	GG	GG	AA	TT	CC	GG	GT	CT	CC
12._MO_9	CT	AT	CG	CT	CT	CC	GT	AA	TT	AC	CG	GT	CT	AC
13._GC-05-119-3-21	CT	AT	CG	CT	CT	CC	GT	AA	TT	AC	CG	GT	CT	AC
14._GC-05-071-2-22	CT	AT	CG	CT	CT	CC	GT	AA	TT	AC	CG	GT	CT	AC
15._GC-05-071-2-22	CT	AT	CG	CT	CT	CC	GT	AA	TT	AC	CG	GT	CT	AC
16._GC-05-071-2-22	CT	AT	CG	CT	CT	CC	GT	AA	TT	AC	CG	GT	CT	AC
17._MO_9	CT	AT	CG	CT	CT	CC	GT	AA	TT	AC	CG	GT	CT	AC
18._MO_9	CT	AT	CG	CT	CT	CC	GT	AA	TT	AC	CG	GT	CT	AC
19._MO_9	CT	AT	CG	CT	CT	CC	GT	AA	TT	AC	CG	GT	CT	AC
20._GC-05-071-2-22	CT	AT	CG	CT	CT	CC	GT	AA	TT	AC	CG	GT	CT	AC
21._MO_9	CT	AT	CG	CT	CT	CC	GT	AA	TT	AC	CG	GT	CT	AC
22._RUQ_1691	AG	AA	CG	AG	GG	CC	CC	__	AA	CC	GG	AC	__	CC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AA	GG	AA	CC	AA	CC	AA	CC	GT	AC	AA	GG	X_X	X_X
1._GC-05-119-3-21	AA	GG	AA	CC	AA	CC	AA	CC	GT	AC	AA	GG	X_X	X_X
2._GC-05-119-3-21	AA	GG	AA	CC	AA	CC	AA	CC	GT	AC	AA	GG	X_X	X_X
3._GC-05-071-2-22	AA	GG	AA	CC	AA	CC	AA	CC	GT	AC	AA	GG	X_X	X_X
4._GC-05-071-2-22	AA	GG	AA	CC	AA	CC	AA	CC	GT	AC	AA	GG	X_X	X_X
5._MO_9	AA	GG	AA	CC	AA	CC	AA	CC	GT	AC	AA	GG	X_X	X_X
6._MO_9	AA	GG	AA	CC	AA	CC	AA	CC	GT	AC	AA	GG	X_X	X_X
7._MO_9	AA	GG	AA	CC	AA	CC	AA	CC	GT	AC	AA	GG	X_X	X_X
8._GC-05-119-3-21	AA	GG	AA	CC	AA	CC	__	CC	GT	AC	AA	GG	X_X	X_X
9._MO_9	AA	GG	AA	CC	AA	CC	__	CC	GT	AC	AA	GG	X_X	X_X
10._RUQ_1691	__	__	__	__	AA	__	__	__	__	AC	__	__	X_X	X_X
11._MO_9	AA	GG	AA	CC	AA	__	AC	CC	GT	AC	AA	GG	X_X	X_X
12._MO_9	AG	AG	AT	CT	AG	CG	AC	CT	GG	AA	AT	CG	X_X	X_X
13._GC-05-119-3-21	AG	AG	AT	CT	AG	CG	AC	CT	GG	AA	AT	CG	X_X	X_X
14._GC-05-071-2-22	AG	AG	AT	CT	AG	CG	AC	CT	GG	AA	AT	CG	X_X	X_X
15._GC-05-071-2-22	AG	AG	AT	CT	AG	CG	AC	CT	GG	AA	AT	CG	X_X	X_X
16._GC-05-071-2-22	AG	AG	AT	CT	AG	CG	AC	CT	GG	AA	AT	CG	X_X	X_X
17._MO_9	AG	AG	AT	CT	AG	CG	AC	CT	GG	AA	AT	CG	X_X	X_X
18._MO_9	AG	AG	AT	CT	AG	CG	AC	CT	GG	AA	AT	CG	X_X	X_X
19._MO_9	AG	AG	AT	CT	AG	CG	AC	CT	GG	AA	AT	CG	X_X	X_X
20._GC-05-071-2-22	AG	AG	AT	CT	AG	CG	AC	CT	GG	AA	AT	CG	X_X	X_X
21._MO_9	AG	AG	AT	CT	AG	CG	AC	CT	GG	AA	AT	CG	X_X	X_X
22._RUQ_1691	__	GG	AA	GG	AA	GG	AC	GG	AC	AC	AA	GG	X_X	X_X

Input profile: MO_9

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Mars Center for Cocoa Science, Brazil

Location: 5321 2

Dapeng Zhang, 2016

1._MO_9 GC-05-119-3-21

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP3

2._MO_9 GC-05-119-3-21

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

3._MO_9 GC-05-071-2-22

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

4._MO_9 GC-05-071-2-22

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

5._MO_9

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5222 5

Dapeng Zhang, 2016

6._MO_9

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5222 1 > FP

Dapeng Zhang, 2016

7._MO_9

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5321 4 > FP

Dapeng Zhang, 2016

8._MO_9 GC-05-119-3-21

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP4

9._MO_9

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5321 3 > FP

Dapeng Zhang, 2016

10._MO_9 RUQ_1691

identical
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

11._MO_9

98.7 %
39 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D835

Dapeng Zhang, 2016

12._MO_9

62.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5321 5

Dapeng Zhang, 2016

13._MO_9 GC-05-119-3-21

62.5 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

14._MO_9 GC-05-071-2-22

62.5 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP4

15._MO_9 GC-05-071-2-22

62.5 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP3

16._MO_9 GC-05-071-2-22

62.5 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

17._MO_9

62.5 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5222 2 > FP

Dapeng Zhang, 2016

18._MO_9

62.5 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5222 3 > FP

Dapeng Zhang, 2016

19._MO_9

62.5 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5222 4 > FP

Dapeng Zhang, 2016

20._MO_9 GC-05-071-2-22

61.5 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

21._MO_9

61.5 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5222 2 > FP

Dapeng Zhang, 2016

22._MO_9 RUQ_1691

50 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25